Pathogen: Fungal community in Birch leaves from Satakunta, Finland (August 2011)

Usage Rights

This data is Free within projects.

Dataset Abstract

Fungal pathogens can be detrimental to forest ecosystems by affecting tree mortality. Other fungal species may be able to colonize niches to the extent of excluding pathogens. However little is known about how tree species diversity affects the fungal community. Are the fungal communities the same in monocultures of a tree species in comparison with those communities that found in more mixed forest stands? To that end, we aim to determine the distribution of fungal species along a tree diversity gradient in one tree species within the experiment at Satakunta, Finland. Birch (Betula pendula) leaves were collected in August 2011 from trees grown in mixture with up to four other tree species. To obtain information about the fungi found in these leaves, a massively parallel high throughput sequencing approach will be taken.

Dataset Design

One of the objectives in task 4.6 was achieved with the sampling of fresh leaves from target trees, which was to collect leaves for molecular analysis of the fungal community. Trees were sampled only in Area 1 of Satakunta. Five trees per species were randomly pre-selected for sampling. Birch leaves were sampled from trees along a tree species diversity gradient. The sampling scheme included two plots from the birch monoculture plots, one plot from each two and three mixture containing birch, and two plots from the five species mixture. Four branches were cut per tree: two from the upper canopy facing the North and South, and two from the lower canopy facing the North and South. Leaves were selected randomly from each branch for a total of 20 leaves per tree: five leaves from the upper canopy and five leaves from the lower part of the canopy, and for each branch, the north and south facing expositions. Leaves were dried in paper bags for three days at 60 deg C, and subsequently stored at room temperature.

Spatial Extent

Plantation: Satakunta, Finland

Temporal Extent

Between August 12, 2011 and August 15, 2011

Taxonomic Extent

Leaves from Betula pendula

Data Analysis

DNA was extracted from 10 birch leaves per tree (5 from each of the two canopy levels). Fungal community was amplified with fungal-specific primers fITS7 and barcoded-ITS4, the latter of which would aid in disentangling sequences from different samples. Pooled amplicons were sent to Eurofins MWG Operon for 454 pyrosequencing using GS Junior. Raw sequences were demultiplexed in the SCATA pipeline (http://scata.mykopat.slu.se/) (run number: scata1897) using default parameters and clustering at 1.5% dissimilarity. There were nearly 30,000 sequence reads that were clustered into 163 Operational taxonomic units (OTUs), which are approximately equivalent to species. Singletons were excluded. Non-metric multidimensional scaling ordination will be performed on the data and significance of the ordination can be confirmed by methods such as non-parametric analysis of variance (NPMANOVA) and ANOSIM. Comparison of single species in different treatments will be conducted as well. Raw sequence read counts are reported. It is advisable to convert to each operational taxonomic unit (OUT) per sample into frequencies before any analysis is conducted.

Data columns available in the raw data part of this dataset

plot
Plot Id
Data group: Satakunta Plot Id
Values
18
22
15
21
11
tree.id
Tree id
Data group: Tree id
Values
11_0805
11_0709
11_0605
11_0907
11_0406
richness
Species richness
Data group: Species richness
Keywords: diversity
Values
5
2
1
3
species
Tree species
Data group: Tree species
Values
Betula pendula
barcode
DNA barcode
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
333
323
324
328
325
OTU_3
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
107
122
10
11
12
OTU_5
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
12
11
10
13
OTU_6
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
11
10
12
1
OTU_1
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
10
0
11
12
1
OTU_10
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
12
13
0
11
OTU_7
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
11
0
10
12
OTU_4
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
15
0
10
1
OTU_2
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
12
10
11
OTU_12
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
12
1
0
14
10
OTU_8
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
10
0
19
25
OTU_11
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
11
0
1
12
13
OTU_9
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
19
1
2
3
OTU_17
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
10
12
13
1
0
OTU_13
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
1
16
14
OTU_18
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
2
4
1
0
OTU_14
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
3
0
11
2
OTU_16
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
2
3
1
0
OTU_26
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
2
1
14
OTU_15
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
3
1
4
OTU_19
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
1
0
2
3
OTU_20
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
3
4
0
1
OTU_21
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
1
3
2
0
OTU_34
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
3
1
5
OTU_27
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
6
2
4
1
0
OTU_22
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
12
2
5
1
OTU_24
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
3
2
0
OTU_33
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
8
0
3
2
1
OTU_23
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
4
1
0
2
OTU_29
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
3
8
OTU_37
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
3
1
4
OTU_30
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
4
2
9
OTU_47
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
4
1
2
3
OTU_36
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
1
2
OTU_39
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
4
2
3
OTU_41
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
0
3
1
2
OTU_42
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
6
1
3
OTU_48
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
2
3
0
OTU_35
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
14
0
OTU_57
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
10
OTU_43
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
4
3
OTU_44
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
13
OTU_46
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
6
OTU_45
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
7
0
1
2
OTU_68
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
7
5
0
OTU_58
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
1
0
2
OTU_59
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
5
0
1
OTU_49
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
3
OTU_52
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
OTU_63
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
3
2
0
OTU_97
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
6
OTU_38
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
8
OTU_55
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
6
OTU_56
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
2
1
0
OTU_98
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
5
2
0
OTU_51
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
3
0
2
OTU_53
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
7
OTU_60
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
1
OTU_78
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
5
0
2
OTU_99
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
5
1
0
OTU_147
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
0
1
OTU_61
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
1
OTU_62
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
OTU_73
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
OTU_75
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
5
0
OTU_80
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_84
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
OTU_92
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
4
OTU_54
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
2
0
OTU_66
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
2
OTU_69
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
1
OTU_71
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
2
0
OTU_72
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
2
OTU_76
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
1
OTU_82
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
2
0
OTU_118
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
5
0
OTU_157
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
5
OTU_191
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
4
1
OTU_65
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
OTU_70
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
OTU_88
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
0
OTU_91
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_93
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
OTU_96
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
1
OTU_100
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
4
OTU_101
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
1
OTU_107
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
3
OTU_112
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_129
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
3
OTU_144
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
3
OTU_159
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
0
OTU_244
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
4
OTU_251
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
0
OTU_300
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
4
0
OTU_79
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_81
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_85
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_86
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_87
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_90
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
1
0
OTU_95
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
2
0
OTU_102
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
2
0
OTU_106
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
OTU_115
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
2
OTU_117
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_120
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
1
OTU_125
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
1
OTU_128
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
OTU_133
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
OTU_137
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_143
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
3
0
OTU_145
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_148
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
2
OTU_172
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_195
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_260
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
3
OTU_94
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_104
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_105
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_113
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_114
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_116
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_119
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_121
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_122
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_123
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_126
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_127
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_130
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_131
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_134
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_135
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_136
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_138
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_142
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_146
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_149
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_150
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
OTU_151
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_152
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_154
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_155
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
OTU_156
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_158
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_160
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_161
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
OTU_165
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_173
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_180
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_182
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
1
OTU_184
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_203
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_218
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_227
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_253
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_264
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_269
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
1
0
OTU_277
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_280
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_281
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_296
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2
OTU_303
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_305
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
2
0
OTU_307
Operational Taxonomic Unit (OTU) (approx. fungal species)
Unit: raw counts of sequence reads
Data group: Pathogen assessment
Keywords: pathogen, fungal community
Values
0
2